PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G021000.1.p
Common NameSb05g001790, SORBIDRAFT_05g001790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 421aa    MW: 46057.8 Da    PI: 4.5188
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G021000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-1582142155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +     +  k ++++lg ++++e Aa+a++ a++k++g
  Sobic.005G021000.1.p  82 SVYRGVTRHRWTGRFEAHLWDkHCLaalHNkkKGRQVYLGAYDSEEAAARAYDLAALKYWG 142
                           78*******************9999888445555*************************98 PP

2AP256.47.5e-18185236155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g
  Sobic.005G021000.1.p 185 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRG 236
                           89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-1782151IPR016177DNA-binding domain
CDDcd000182.17E-1182151No hitNo description
PfamPF008476.8E-1382142IPR001471AP2/ERF domain
PROSITE profilePS5103220.683150IPR001471AP2/ERF domain
SMARTSM003801.1E-2783156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1683151IPR001471AP2/ERF domain
CDDcd000181.16E-26185246No hitNo description
PfamPF008472.4E-13185236IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-18185246IPR016177DNA-binding domain
SMARTSM003801.0E-26186250IPR001471AP2/ERF domain
PROSITE profilePS5103219.019186244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18186244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDMERSQQQK SPTESPPPPS PSSSSSSVSA DTVLPPPGKR RRAATTAKAK AGAKPKRARK  60
DAAAAADPPP PPAAAAAGKR SSVYRGVTRH RWTGRFEAHL WDKHCLAALH NKKKGRQVYL  120
GAYDSEEAAA RAYDLAALKY WGPETLLNFP VEDYSSEMPE MEGVSREEYL ASLRRRSSGF  180
SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTFDTQ EEAAKAYDLA AIEYRGVNAV  240
TNFDISCYLD HPLFLAQLQQ EPQVVPALNQ EAQPDQSETE TIAQESVSSE AKTPDDNAEP  300
DDNAEPDDIA EPLITVDDSI EESLWSPCMD YELDTMSRSN FGSSINLSEW FNDADFDSNI  360
GCLFDGCSAV DEGGKDGVGL ADFSLLEDFS LFEAGDGQLK DVLSDMEEGI QPPTMISVCN  420
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.210490.0panicle| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381840.0BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269100.0KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450194.10.0hypothetical protein SORBIDRAFT_05g001790
SwissprotQ6X5Y67e-99WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLC5Y3Y90.0C5Y3Y9_SORBI; Putative uncharacterized protein Sb05g001790
STRINGSb05g001790.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-74AP2 family protein